Evaluate a network of protein complexes
Usage
X.network.stats(
data = NULL,
scores.col = NA,
standard.set = NULL,
labels.col = NA,
complex.stats = FALSE,
interconnected = FALSE
)Arguments
- data
Data frame with columns 'protein1' and 'protein2' and pairwise prediction values.
- scores.col
Character string: Name of the data column with model scores.
- standard.set
Data frame with columns protein1, protein2 and another column with labels.
- labels.col
Character string: Name of the columns with labels.
- complex.stats
Logical: Should the statistics specific for protein complexes be calculated? Do not use with unclustered networks. Default is FALSE.
- interconnected
Logical: If TRUE, the statistics will be calculated on interconnected network, meaning that even the subunits that are present in the same cluster, but did not pass the prediction cut-off, will be considered interconnected. Default is FALSE.