Using a database table with Entry names and GO terms, assemble a table of putatively non-interacting proteins.
Usage
X.assemble.negstandard(data = NULL, sep = ";", cutoff = 0)
Arguments
- data
Data frame with two columns: First for protein IDs and second for separated GO terms.
- sep
Separator for the GO terms in the second column
- cutoff
Numeric: How many GO terms can a pair of proteins share to still be included in the list of
non-interacting proteins?
Value
A data frame with pair-wise negative standard table for protein-protein interactions.
Examples
GSneg <- X.assemble.negstandard(data=GOterms, sep=";")
#> Error: object 'GOterms' not found